Author(s):
Manjunatha E, Murugan Vedigounder, Geetha K M, R Nandeesh, Syed Mansoor Ahmed
Email(s):
manjupharma@gmail.com
DOI:
10.52711/0974-360X.2024.00706
Address:
Manjunatha E1*, Murugan Vedigounder2, Geetha K M3, R Nandeesh4, Syed Mansoor Ahmed5
1Department of Pharmaceutical Chemistry, Sree Siddaganga College of Pharmacy, Tumkur, Karnataka, India.
2Department of Pharmaceutical Chemistry, Nargund College of Pharmacy, Bengaluru, Karnataka, India.
3College of Pharmaceutical Sciences, Dayananda Sagar University, Bengaluru, Karnataka, India.
4Department of Pharmacognosy, Sree Siddaganga College of Pharmacy, Tumkur. India.
5Department of Pharmacology, Sree Siddaganga College of Pharmacy, Tumkur. India.
*Corresponding Author
Published In:
Volume - 17,
Issue - 9,
Year - 2024
ABSTRACT:
To explore the interaction of compounds isolated from Ziziphus rugosa (Rahmnaceae) with human Histamine H2 and H/K+ ATPase receptor proteins for In-silico antiulcer activity the present study was performed. Because of the exceptional availability of phytoconstituents as pure chemicals in natural products or standardised extracts, the possibilities for innovative drug development are nearly limitless. Ziziphus rugosa (Rahmnaceae) is one of the traditional medicinal plant used in treatment of various ailments and the ethanolic extract of its bark is reported to have antiulcer activity. Four compounds were isolated form the ethanolic extract of bark to explore the interaction of isolated compounds with human Histamine H2 and H/K+ ATPase receptor proteins. We performed molecular docking studies using AutoDock4.2, non-targeted and local docking approaches were employed for the binding mode and interaction study of antiulcer compounds. From the results, Ligand [(4-[(E)-2-(5-ethyl-7-hydroxyquinazolin-2-yl) ethenyl]-2-methyl cyclohexane-1-carboxylic acid] showed binding affinity score -8.26 kcal/mol with Histamine-H2 receptor and The ligand Beutilinc acid showed binding affinity score of -6.68 kcal/mol for (H+ /K+ -ATPase) receptor. From these studies, it is demonstrated that Ziziphus rugosa bark consists of potential leads for ulcer healing activity as revealed by in silico studies.
Cite this article:
Manjunatha E, Murugan Vedigounder, Geetha K M, R Nandeesh, Syed Mansoor Ahmed. Isolation, Characterization and In-silico screening of compounds from Ziziphus rugosa bark for their Antiulcer effect. Research Journal of Pharmacy and Technology. 2024; 17(9):4575-1. doi: 10.52711/0974-360X.2024.00706
Cite(Electronic):
Manjunatha E, Murugan Vedigounder, Geetha K M, R Nandeesh, Syed Mansoor Ahmed. Isolation, Characterization and In-silico screening of compounds from Ziziphus rugosa bark for their Antiulcer effect. Research Journal of Pharmacy and Technology. 2024; 17(9):4575-1. doi: 10.52711/0974-360X.2024.00706 Available on: https://rjptonline.org/AbstractView.aspx?PID=2024-17-9-67
REFERENCES:
1. Fabricant DS and Farnsworth NR. The value of plants used in traditional medicine for drug discovery. Environ Health Perspect. 2001; 109 (1): 69-75.
2. Newman DJ and Cragg GM. Natural products as sources of new drugs over the last 25 years. J. Nat. Prod. 2007; 70: 461-477
3. Mahesha M. Poojary, Kanivebagilu A, Vishnumurthy, Airody Vasudeva Adhikari. Extraction, characterization and biological studies of phytochemicals from Mammeasuriga. J Pharm Analysis. 2015; 5(3): 182-189.
4. Matlou Phineas Mokgotho, Stanley SecheneGololo, Peter Masoko, Ladislaus Kakore Mdee, Vusi Mbazima, Leshwene Jeremiah Shai, Victor Patrick Bagla, JacobusNicolaasEloff, LeseilaneMampuru. Isolation and Chemical Structural Characterisation of a Compound with Antioxidant Activity from the Roots of Sennaitalic Evid Based Complement. Alternat Med. 2013; 2013: 1-6.
5. Cos P, Vlietinck AJ, Berghe DV and Maes L. Anti-infective potential of natural products: how to develop a stronger in vitro 'proof-of-concept'. J. Ethnopharmacol. 2006; 106(3): 290-302.
6. Tripathi Y C, Devi S, Pandey V B and Shah A H. Phytochemical study of Z. Rugosa Fitoterapia. 1998; 59(2): 158.
7. Sivaraman P, Vivekraj T, Gangadharan and MuthuselvamD.An Annotated Checklist of the Medicinal Plants from Thalamalai Hills, Namakkal District, Tamilnadu, India. Int J Phytopharm. 2016; 6(2): 31-35.
8. AbhimanyYadav and Pratiksha Singh.: Analgesic and anti-inflammatory activities of Zizyphusrugosa root bark. J Chem Pharm Res. 2010; 2(3): 255-259.
9. ShafeeqMohamad, Royal Frank P, AhammedShameem A K, Noby T John and Rahul B. Maliekal. In vivo and In vitro Antidiabetic Activity of Ziziphus rugosa Lam. Bark. Int J UniPhar Bio Sci. 2013; 3: 2-5.
10. Shoeb M, Mamun M I R, Nahar N and Mosihuzzaman M. Biological Screening of Zizyphus rugosa and Zizyphusoen oplia extractives. Dhaka Uni J Phar Sci. 2005; 4(2): 131-34.
11. Valko M, Leibfritz D, Moncol J, Cronin M T D, Mazur M and Telser J. Free radicals and antioxidants in normal physiological functions and human disease. Int J Biochem Cell Biol. 2007; 9(1): 44-84.
12. Gyamfi M A, Yonamine M, and Aniya Y. Free radical scavenging activity of medicinal herb of Ghana: Thonningiasanguinea on experimentally induced liver injuries. Gen Pharmacol. 2013; 32(6): 661-667.
13. Bharathi D P, Jegad E and Kavimani S. Antiulcer activity of aqueous extract of fruits of Momordicacymbalaria Hook f. in Wistar rats. Pharmacog Res. 2009; 2(1): 58-61.
14. Morris GM and Lim-Wilby M. Molecular Docking. In: Kukol A. (eds) Molecular Modeling of Proteins. Methods Molecular Biology™. 208; 443: 365-382.
15. Matter H and Sotriffer C. Applications and success stories in virtual screening in virtual screening: principles, challenges, and practical guidelines. 2011; 319–358.
16. Manjunatha E, Murugan Vedigounder, Geetha K M, R Nandeesh, and Syed Mansoor Ahmed. Antioxidant and Antiulcer activity of Ziziphus rugosa Lam. bark. Research J Pharm Tech. 2020; 13 (10)1; 4720-4724.
17. Manjunatha E, Nandeesh R, Ahmed SM. Antiulcer and ulcer healing potential of some medicinal plants: A review. Res J Pharmacog and Phytochem. 2022; 14(1): 37-42.
18. Manjunatha E, Vedigounder M, Geetha KM, Nandeesh R. Phytochemical and GC-MS analysis of Ziziphus rugosa bark. IntJ Pharm Res. 2020; 12: 1886-91.
19. AbhinavPrasoon Mishra, Rakesh Kumar Meel. Synthesis and Pharmacological Evaluation of the derivatives of 1,4-dihydropyridine: A Pleiotropic Molecule with Antiulcer activity. Research Journal of Pharmacy and Technology. 2023; 16(2): 561-5. doi: 10.52711/0974-360X.2023.00096
20. Manjunatha E, Murugan Vedigounder, Geetha K M, R Nandeesh, M N Palaksha. Review on A Wild Medicinal Plant: Ziziphus rugosa . Int. J. Pharm. Sci. Rev. Res. 2020; 62(2); 40-44.
21. Prakash V Saxena, Gupta S, Saxena AK and Yadav R. Preliminary Phytochemical screening and Biological Activities of Adina cardifolia. J Micro Biochem Tech. 2015; 7: 033-032.
22. Alhassan D, Uba A, Muhammad A and Muhammad Y. Phytochemical screening and antimicrobial activity of crude stem bark extracts of Anogeissusleiocarpus. Euro J Med Plants. 2016; 11(2): 1-7.
23. Ogunmoye, Abdulrazaq Oladosu, Ibrahim Onocha, Patricia Choudhary, and Iqbal. Isolation of Betulinic acid from the stem bark and root of Uapacaguineensis. J Res Rev Sci. 2017; 4 (10): 82-87.
24. Sambandam B, Thiyagarajan D, Ayyaswamy A and P. Raman. Extraction and Isolation of Flavonoid Quercetin from the Leaves of Trigonellafoenum-Graecum and their Anti-Oxidant Activity. Int J Pharm and Pharm Sci. 2016; 8(6): 120-124.
25. Neeraj Upmanyu, Surya Gupta, B N Prakash, Gopal Garg, P Mishra. Cheminformatics: A New Approach. Research J. Pharm. and Tech. 2008; 1(1): 2-5 .
26. Kwon HC, YD Min KR, Kim EJ, Bang CS and KR. Lee. A new acylglycosyl sterol from Quisqualisfructus. Archives Pharm Res. 2003; 26(4): 275-278.
27. Noel MG and F.M. Dayrit. Triterpenes in the callus culture of Vitexnegundo L. Philip J Sci. 2005; 134 (1): 5-19.
28. Biovia DS (2016). Discovery Studio Modeling Environment, Release 2017, San Diego [WWW Document]. Dassault Systèmes.
29. DeLano WL, (2002) The PyMOL Molecular Graphics System, Version 1.1. Schrödinger LLC http://www.pymol.org. https://doi.org/10.1038/hr.2014.17
30. Kumbhar BV, Bhandare VV, Panda D and Kunwar A. Delineating the interaction of combretastatin A-4 with αβ tubulin isotypes present in drug resistant human lung carcinoma using a molecular modeling approach. J Biomol Struct Dyn. 2020; 38. https://doi.org/10.1080/07391102.2019.1577174
31. Kumbhar BV, Borogaon A, Panda D and Kunwar A. Exploring the origin of differential binding affinities of human tubulin isotypes αβII, αβIII and αβIV for DAMA-colchicine using homology modelling, molecular docking and molecular dynamics simulations. PLoS One., 2016; 11. https://doi.org/10.1371/journal.pone.0156048
32. Laskowski RA, Mac Arthur M.W, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993; https://doi.org/10.1107/S0021889892009944
33. Rollando Rollando, Warsito Warsito, Masruri Masruri, Nashi Widodo. Potential matrix metalloproteinase-9 inhibitor of aurone compound isolated from Sterculia quadrifida leaves: In-vitro and in-silico studies. Res J Pharmand Tech. 2022; 15(11): 5250-4.
34. Morris GM, Ruth H, Lindstrom W, Sanner MF, Belew RK, Goodsell DS and Olson AJ.: Software news and updates AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem. 2009; 30: 2785–2791. https://doi.org/10.1002/jcc.21256
35. Rai A, Gupta TK, Kini S, Kunwar A, Surolia A and Panda D.CXI-benzo-84 reversibly binds to tubulin at colchicine site and induces apoptosis in cancer cells. Bioche Pharmacol. 2013; 86: 378–391. https://doi.org/10.1016/j.bcp.2013.05.024
36. V. Nagalakshmi, J. Lavanya, B. Bhavya, V. Riya, B. Venugopal, A. Sai Ramesh. In-silico Profiling of Deleterious Non Synonymous SNPs of Homogentisate 1, 2 Dioxygenase (HGD) Gene for Early Diagnosis of “Alkaptonuria”. Res J Pharm and Tech. 2022; 15(9): 3898-4.
37. Venghateri JB, Gupta TK, Verma PJ, Kunwar A and Panda D. Ansamitocin P3 depolymerizes microtubules and induces apoptosis by binding to tubulin at the vinblastine site. PLoS One. 2013; 8: e75182. https://doi.org/10.1371/journal.pone. 0075182
38. Amrita Muralikrishnan, Radhika R Nair, Jifitha Banu, Leena K Pappachen. In silico designing of some Benzimidazole derivatives for Anti-fungal activity. Res J Pharm and Tech. 2021; 14(9): 4983-6.
39. Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, De Beer TAP, Rempfer C, Bordoli L, Lepore R and Schwede T. (2018). SWISS-MODEL: Homology modelling of protein structures and complexes. Nucleic Acids Res.https://doi.org/10.1093/nar/gky427
40. Sung-Pyo Jun, Yen-Yoo You, Sae-Hong Cho. Development of Shoes Preventing Musculoskeletal Injuries attached with a ICT Convergent Smart Health Care Monitoring System. Res J Pharm and Tech. 2017; 10(8): 2837-2842.