Author(s):
A K Ramya, K Sethumadhavan, R Devika
Email(s):
akramya@gmail.com , sethumadhavanmicro@gmail.com , vineethdevika@gmail.com
DOI:
10.52711/0974-360X.2024.00678
Address:
A K Ramya1*, K Sethumadhavan2, R Devika3
1,2Department of Microbiology, Aarupadai Veedu Medical College and Hospital, Vinayaka Missions Research Foundation (DU), Pondicherry, India.
3Professor Cum RPMO, Department of Biotechnology, Aarupadi Veedu Institute of Technology, Vinayaka Mission’s Research Foundation (DU), Paiyanoor, Chennai, India.
*Corresponding Author
Published In:
Volume - 17,
Issue - 9,
Year - 2024
ABSTRACT:
The rising incidence of Multi-Drug Resistant (MDR) bacterial strains poses a grave threat to global public health. In the present study, two potential novel purified compounds, 13-Oxabicyclo[9.3.1]pentadecane,15-chloro- and 3-Pyridinemethanol, 5-hydroxy-4-(methoxymethyl)-6-methyl-, hydrochloride, isolated from the endophyte Asaialannensis, were docked with MDR genes and explored the binding affinities and interactions. The study involved the computational analysis of the binding modes and binding energies of the two novel compounds against a panel of bioactive ligands against the active sites of the bacterial Penicillin-Binding Protein 1b (PBP 1b) targetMDR genes with Easy Dock Vina Software. The docking results revealed that both 13-Oxabicyclo[9.3.1]pentadecane, 15-chloro- and 3-Pyridinemethanol, 5-hydroxy-4-(methoxymethyl)-6-methyl-, hydrochloride exhibited promising binding affinities and interactions with MDR genes. The comparative analysis suggested that these novel compounds may possess the capability to inhibit MDR gene activity effectively, offering a potential solution to combat drug-resistant bacterial infectionswith binding affinity values falling within the range of -6.1kcal/mol to -5.1kcal/mol.
Cite this article:
A K Ramya, K Sethumadhavan, R Devika. A Comparative Study of Molecular Docking Analysis Study of Novel 13-Oxabicyclo[9.3.1]pentadecane, 15-chloro- and 3-Pyridinemethanol, 5-hydroxy-4-(methoxymethyl)-6-methyl-, hydrochloride from endophyte Asaialannensis against Multi Drug Resistant gene. Research Journal of Pharmacy and Technology. 2024; 17(9):4389-3. doi: 10.52711/0974-360X.2024.00678
Cite(Electronic):
A K Ramya, K Sethumadhavan, R Devika. A Comparative Study of Molecular Docking Analysis Study of Novel 13-Oxabicyclo[9.3.1]pentadecane, 15-chloro- and 3-Pyridinemethanol, 5-hydroxy-4-(methoxymethyl)-6-methyl-, hydrochloride from endophyte Asaialannensis against Multi Drug Resistant gene. Research Journal of Pharmacy and Technology. 2024; 17(9):4389-3. doi: 10.52711/0974-360X.2024.00678 Available on: https://rjptonline.org/AbstractView.aspx?PID=2024-17-9-39
REFERENCES:
1. Lee Ventola C. The Antibiotic Resistance Crisis Part 1: Causes and Threats., 2015.
2. Magiorakos A-P et al. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. doi:10.1111/j.1469-0691.2011.03570.x.
3. Strobel GA. Endophytes as sources of bioactive products. Microbes Infection. 2003; 5(6): 535–544. doi:10.1016/S1286-4579(03)00073-X.
4. Mohamed A et al. Isolation and Characterization of Fungal Endophytes Isolated from Medicinal Plant Ephedra pachyclada as Plant Growth-Promoting. 2021. doi:10.3390/biom11020140.
5. Saikia S, Bordoloi M. Molecular Docking: Challenges, Advances and its Use in Drug Discovery Perspective. Current Drug Targets. 2019; 20(5): 501–521. doi:10.2174/1389450119666181022153016.
6. Meng X-Y et al. Molecular docking: a powerful approach for structure-based drug discovery. Current Computational Aided Drug Design. 2011; 7(2): 146–157. doi:10.2174/157340911795677602.
7. Andr´ A et al. Penicillin-binding proteins and b-lactam resistance. Federation of European Microbiological Societies. 2008; 32: 361–385 doi:10.1111/j.1574-6976.2007.00095.x.
8. Rahman MM et al. Isolation and molecular characterization of multidrug-resistant Escherichia coli from chicken meat. Scientific Reports. 2020; 10(1). doi:10.1038/s41598-020-78367-2.
9. Atroverins S et al.Antibacterial Potential with Molecular Docking Study against Multi-Drug Resistant Bacteria and Mycobacterium tuberculosis of Streptomycin Produced Nutraceuticals and Functional Foods Production by using Nano/Biotechnological and Irradiation Processes. View project. 2017. Available at: https://www.researchgate.net/publication/316413434.
10. Bush K, Bradford PA. b-Lactams and b-Lactamase Inhibitors: An Overview. Cold Spring Harb Perspect Med ; 6: a025247 2016; 6(a025247). doi:10.1101/cshperspect.a025247.
11. Lin L et al. Distribution of the multidrug efflux pump genes, adeABC, adeDE and adeIJK, and class 1 integron genes in multiple-antimicrobial-resistant clinical isolates of Acinetobacter baumannii–Acinetobacter calcoaceticus complex. International Journal of Antimicrobial Agents. 2009; 33(1): 27–32. doi:10.1016/J.IJANTIMICAG.2008.06.027.
12. Kim S et al. PubChem Substance and Compound databases. Nucleic Acids Res 2016; 44. doi:10.1093/nar/gkv951.
13. Berman H, Westbrook J. The Protein Data Bank Protein Data Bank View project CADRAD View Project. 2000. Available at: http://www.rcsb.org/pdb/status.html.
14. Bissantz C et al. A Medicinal Chemist’s Guide to Molecular Interactions. Journal of Medical Chemistry. 2010; 53: 5061. doi:10.1021/jm100112j.
15. Steiner T. The Hydrogen Bond in the Solid State. AngewandteChemie International Edition. 2002; 41(1): 48–76. doi:10.1002/1521-3773(20020104)41:1<48:AID-ANIE48>3.0.CO;2-U.
16. Kobayashi M et al. Identification of novel potential antibiotics against Staphylococcus using structure-based drug screening targeting dihydrofolate reductase. Journal of Chemical Information and Modeling. 2014; 54(4): 1242–1253. doi:10.1021/ci400686d.
17. Dongre P et al. In silico and Molecular Docking Studies of Black Pepper Phyto-constituents against EmrD Efflux Pump of E. coli. Indian Journal of Pharmaceutical Education and Research. 2022; 56(1): 199–206. doi:10.5530/ijper.56.1.23.
18. Aoumeur N et al. Molecular docking studies for the identifications of novel antimicrobial compounds targeting of staphylococcus aureusMoroccan Journal of Chemistry. 2021. Available at: http://revues.imist.ma/?journal=morjchem&page=login.
19. Haliru Yakubu Aet al. Antibacterial activity of the root extracts of Garcinia Kola against MDR Staphylococcus aureus : Invitro and insilico studies Biological and Medical Chemistry. 2021;
20. Kumar PP, Somasundaram S. Insilico Docking Studies of Novel Phytoligands of Mimosa pudica against Methicillin Resistant Staphylococcus aureus. Available at: www.ripublication.comijaer.htm.