Computational, Molecular modelling and Anxiolytic potential of 5-HT3 receptor antagonist

 

Venkatesha Perumal R1, Revathi R2*

1Applied Chemistry Department, School of Applied Natural Sciences,

Adama Science and Technology University, Adama, Ethiopia.

2Drug Discovery Research, Trichy Ayurvedic Union, Tiruchirappalli, Tamilnadu, India.

*Corresponding Author E-mail: rrvmsu@gmail.com

 

ABSTRACT:

Serotonin-3 receptor antagonists are useful for treating nausea and vomiting induced by a variety of reasons. These have an impact on a variety of neuropsychiatric illnesses. As a result, we attempted to investigate the anxiolytic potential of the test drug,6j{2-[4-(4-nitro-phenyl)-piperazin-1-yl]-[1,8]naphthyridine-3-carbonitrile}and compare it to the typical 5-HT3 receptor antagonist, ondansetron. To determine the drug-likeness, computational experiments were conductedusing Molinspiration and Swiss ADME and toxicity profile using ProTox-IItools. Binding affinity of the test and standard drug with the 5-HT3 receptor (pdb id: 6HIS) was assessed by in-silico molecular modelling studies using AutoDoc Vina. Anxiolytic screening was performed using mouse elevated plus maze model. Both the test and standard drugs have good pharmacokinetic (ADME) and same level of toxicity profiles. The test drug, 6j, showed better binding affinity (-8.5 vs. -7.7 kcal/mol) with the receptor protein compared to ondansetron. In anxiolytic animal model, 6jand ondansetron showed anxiolytic potential at 10 mg/kg dose.

 

KEYWORDS: 5-HT3 receptor antagonist, Molecular docking, Drug-likeness, Anti-anxiety, Elevated plus maze.

 

 


INTRODUCTION: 

During the last two-decade, serotonin-3 (5-HT3) receptor antagonists (RAs) gaining importance because of its role in the treatment of nausea and vomiting induced by endogenous substances produced during cancer chemotherapy and radiotherapy1. Apart from this, numerous studies suggested that 5-HT3 RAs can be utilized to treat a variety ofneuropsychiatry disorders2-6. Cancer patients are more prone to have anxiety during chemotherapy and radiation treatment7,8. It will be beneficial for the cancer patients if the 5-HT3 RA suppress nausea and vomiting, and have anxiolytic effect. As a result, we evaluated the anxiolytic potential of our previously reported9 molecule of 5-HT3 RA, 6j {2-[4-(4-nitro-phenyl)-piperazin-1-yl]-[1,8]naphthyridine-3-carbonitrile} along with the computational and molecular modelling studies and compared with the standard 5-HT3 RA, ondansetron.

 

MATERIALS AND METHODS:

Computational studies:

Using the Molinspiration cheminformatics10 and SwissADME11 online tools, a computational analysis12-14 was conducted on the test drug, 6j, and ondansetron, to predict its drug-likeness, namely Veber's15,Lipinski's16 rules, and topological polar surface area (TPSA).ProTox-II17, an online tool, was used to predict the toxicity profile of the test and standard drugs.

 

Molecular modelling:

The structure (2D) of the test compound, 6j and ondansetron were drawn (figure 1), converted to 3D structure and the molecule were run for energy minimization using Chem Office tool. For molecular docking analysis the energy minimized ligands was used as an input. The protein target, tropisetron-bound mouse 5-HT3 receptor, (PDB id: 6HIS), were obtained from the RCSB Protein Data Bank. Protein preparation was done using Auto Doc Vina (MGLTools-1.5.6)18-20. Water molecules and bound ligand were cleared from the protein complex; to the protein polar hydrogen atoms and necessary charges were added. The grid box was created to define the active sites with required attributes (center_x = 133.057286, center_y = 98.941429, center_z = 151.201381; size_x = 24, size_y = 27, size_z = 20).The macromolecule (protein) and the ligand were chosen and saved in required format(.pdbqt). During the docking process, various conformers were created for each ligand along with their binding energy21. Biovia Discovery Studio 2020 was used to determine the interactions between the receptor and the ligand by selecting the most favourable conformation with the lowest binding energy22.

 

Figure 1: Structures of test compound, 6j, and standard 5-HT3 receptor antagonist, ondansetron

 

Anxiolytic Screening

The animal studies were granted by the Institutional Animal Ethics Committee. Albino mice (20-25 gm) were used in this study and they were maintained as per the CPCSEA guidelines21. The day before the experiment, the animals were kept in groups of six in plexiglass cages in the laboratory. The experiment was conducted during the light phase of the cycle (8 am - 12 noon. Diazepam (0.2 mg / kg) was used as a positive control; saline as a negative control; ondansetron and test compound 6j were used at doses of 0.1, 1.0 and 10 mg/kg. The drug was dissolved in saline and injected into the intraperitoneal cavity (i.p.) 1 hr. before the test. The experimental data were analyzed using the one-way analysis of variance (ANOVA) test and Tukey-Kramer multiple comparison test using GraphPad InStat 3 software. Statistical significance was established at p < 0.05. The results of anti-anxiety studies are expressed as mean ± SEM.

 

Elevated plus maze (EPM)

The device consists of two oppositely open arms (30 x 5 cm) at right angles and two oppositely closed arms of the same size. The latter is surrounded by walls (10 cm) on all sides, but is open; there are no lips on the open arms. The four arms are delimited in the central area (5 x 5 cm). The entire device is raised (30 cm) above the ground. The mouse was placed alone in the center of the maze and its behaviour was observed during the 5-minute test. Time spent in the open arm of the maze (expressed as the percentage of time spent in the open arm), the entries into the open arms (expressed as the percentage of entries in the open arm); the time spent in the center of the device is ignored22,23.

 

RESULTS:

Computational studies

Parameters used in Molinspiration and SwissADME clearly indicate that the test compound, 6j, and ondansetron satisfied Veber15 and Lipinski16 rules with zero violations (table 1). Toxicity prediction by ProTox-II17 showed higher LD50 for 6j (300 mg/kg) than ondansetron (95 mg/kg); both the compounds showed no toxicity except mutagenicity (table 2).

 

Table 1: Drug-likeness prediction using Molinspiration and SwissADME

S. No.

Properties

6j

Ondansetron

1

MW

360.37

293.36

2

nOHNH

0

0

3

nON

5

2

4

cLogP

1.89

2.54

5

nviol (Lipinski rule)

0

0

6

nrotb

3

2

7

TPSA (Å2)

101.87

39.82

8

nviol (Veber rule)

0

0

MW, molecular weight; nOHNH, number of hydrogen donor; nON, number of hydrogen acceptor; nrotb, number of rotatable bonds; TPSA, topological polar surface area; nviol, number of violations

 

Molecular Modelling

When we performed docking studies of the test and standard compounds with the 5-HT3 receptor, the test compound, 6j, showed binding energy -8.5 kcal/mol, whereas ondansetron showed -7.7 kcal/mol. Table 3 shows that the test drug, 6j, and the 5-HT3 RA, ondansetron, have hydrogen bonding and hydrophobic interactions with the 5-HT3 receptor’s amino acids. The 3D and 2D binding interactions of the test compound, 6j, and ondansetron, with the 5-HT3 receptor are depicted in figure 2.


 

Table 2: Toxicity prediction using ProTox-II

Compound

LD50 (mg/kg)

Toxicity Class

Toxicity

Hepatotoxicity

Carcinogenicity

Immunotoxicity

Mutagenicity

Cytotoxicity

6j

300

3

No

No

No

Yes

No

Ondansetron

95

3

No

No

No

Yes

No

 

 

 

Table 3: Binding energy and amino acid interactions of 6j and ondansetron

Ligand

Binding energy (kcal/mol)

Binding interactions

Hydrogen Bonding

Hydrophobic bonding

6j

-8.5

Trp-63,Arg-169

Ile-44 (π-σ), Trp-63 (π- π, π-Alkyl), Tyr-126 (π-Alkyl)

Ondansetron

-7.7

-

Trp-63 (π-σ), Ile-44 (π-σ, π-Alkyl, Alkyl),Arg-65 (Alkyl, π-Alkyl)

 

6j

Ondansetron

Figure 2: Binding interactions(3D and 2D) of 6j and ondansetron with 5-HT3receptor

 

 


Anxiolytic evaluation:

The response of drugs on % entries in open arms is given in table 4. ANOVA showed extremely significant difference among the given treatments [F (7, 40) = 7.26, p < 0.0001]. Tukey’s test revealed that diazepam (0.2 mg/kg) (p < 0.50), ondansetron (10 mg/kg) (p < 0.5) and 6j (10 mg/kg) (p < 0.1) significantly increased % entries in open arm, whereas the lower doses (1.0 and 0.1 mg/kg) of ondansetron and 6j significantly did not alter the measure in comparison to saline control.

 

The response of drugs on % time spent in open arms is given in table 4. ANOVA showed extremely significant difference among the given treatments [F (7, 40) = 5.79, p = 0.0001]. Tukey’s test revealed that diazepam (0.2 mg/kg), ondansetron (10 mg/kg) and 6j (10 mg/kg) significantly (p < 0.05) increased the % time spent in open arms, whereas in the lower doses (1.0 and 0.1 mg/kg) both ondansetron and 6j did not alter the measure significantly in comparison to saline control.

 

Table 4: Effect of drugs on % open arm entries and % time in open arm (EPM)

Treatment

% Open arm entries

% Time in open arm

Control

6.11 ± 3.89

0.45 ± 0.29

Diazepam (0.2 mg/kg)

27.5 ± 5.09*

2.34 ± 0.45*

Ondansetron (0.1 mg/kg)

6.69 ± 4.3

0.55 ± 0.35

Ondansetron (1 mg/kg)

7.9 ± 5.46

0.56 ± 0.37

Ondansetron (10 mg/kg)

30.1 ± 3.72*

2.33 ± 0.42*

6j (0.1 mg/kg)

6.41 ± 4.3

0.51 ± 0.32

6j (1 mg/kg)

8.35 ± 5.64

0.64 ± 0.41

6j (10 mg/kg)

34.02 ± 3.57**

2.22 ± 0.39*

Values show mean ± SEM; n = 6. *indicates p < 0.05; **indicates p < 0.01 when compared to vehicle control group

 

DISCUSSION:

Computational studies using online tools revealed that both 6j and ondansetron have the drug-likeness properties with same level of toxicity profile. The test compound, 6j, showed higher binding affinity (lesser binding energy) than the standard, ondansetron. The EPM is one of the well-used animal models in preclinical anxiety research, in which rodents are naturally afraid of open space and height22. In this animal model both the compounds showed significant anxiolytic property at higher doses i.e., 10 mg/kg, whereas at lower doses they failed to show significant anxiolytic activity. In both the animal models, the test drug, 6j, showed anxiolytic potential at 10 mg/kg compared to vehicle control but it did not show significant anxiolytic activity compared to ondansetron and diazepam at the various doses tested.

 

ACKNOWLEDGEMENTS:

We sincerely thank Natco Pharma, Hyderabad, India for providing ondansetron as a gift sample and ASTU, Adama for the research facilities.

 

CONFLICT OF INTEREST:

The authors have no conflicts of interest regarding this investigation.

 

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Received on 07.07.2021            Modified on 17.03.2022

Accepted on 29.12.2022           © RJPT All right reserved

Research J. Pharm. and Tech 2023; 16(7):3075-3078.

DOI: 10.52711/0974-360X.2023.00505