Introducing Larger plate and Optimum Distribution Pattern in Microbiological assay
Ali M. Rayshan*, Zuhair H. Al-Rawi, Hasanain A. Odhar
Department of Pharmacy, Al-Zahrawi University College, Karbala, Iraq.
*Corresponding Author E-mail: alirishan7@gmail.com
ABSTRACT:
First, clinical sample antibiotic assay process. 1966, Appl. Microbiol. 14:2:170–177. This modified agar-disks diffusion experiment employs big glass plates to enable 81 replications per plate. With an agar punch, more than agar disks may be made fast. The savings in zone of inhibition (zoi) from high repeated concentrations of diverse antibiotics with big plates and agar-disks makes it economically possible to employ pooled any antibiotic concentrate. Methods for creating disk diffusion agar and inhibiting bacterial susceptibility degradation are provided. Preparing and maintaining assay organisms is described. Instead of diluting antibiotic tablets to a small range at various concentrations to spread the agar well, they are tested immediately to avoid contamination at the tested concentrations. This is conceivable owing to antibiotic mobility (dilution) and curvilinear computations between area and antibiotic concentrations. This approach has been adapted to many antibiotics. With this technology, vast numbers of antibiotic disks may be tested quickly and accurately. Solid media can be used for antimicrobial susceptibility testing. Solids tests are straightforward and affordable, but they aren't quantitative. Antimicrobial agent diffusion may impair the accuracy of plate-based tests. After applying the above, we evaluated this assumption using the "Eight Queens Puzzle Model" of antibiotic dispersion and a disc diffusion test to estimate the connection between agar depth and area of inhibition and to determine the ideal agar depth. Our studies with agar-diffusion in plates and agar thickness demonstrated that this model describes antibiotic zoi sizes accurately. However, linear regression to explain the link between agar thickness and growth inhibition zone for Staphylococcus aureus and Escherichia coli treated with various antibiotic discs, three groups, the first group (erythromycin) emerged-zone equal sizes for both bacteria. Both bacteria were susceptible to gentamicin and ceftriaxone. Ciprofloxacin's three-group model fit best. Streptomycin's residual deviation was the same for both bacteria. The concentration dependency in the streptomycin group was greater than linear, which may imply a range of low susceptibility rather than a single cut-off dose.
KEYWORDS: Antimicrobial susceptibility testing, Zone of inhibition, Eight-queens puzzle.
INTRODUCTION:
Many clinical microbiology laboratories use the agar disk-diffusion test, established in 1944 by Heatley1, to determine antibiotic susceptibility. Clinical and Laboratory Standards Institute (CLSI) provides standards for testing bacteria and yeasts. This method is only suited for testing a subset of fastidious bacterial pathogens 2,3. This procedure includes inoculating agar plates with the bacterium. The test material is then spotted on agar using filter paper discs (about 6mm in diameter).
Petri dishes are heated and humidified. Antimicrobial agents distributed into agar reduce microorganism germination and proliferation. Next, the growth medium, temperature, incubation duration, and inoculum size required by CLSI are measured. Anti-biogram classifies bacteria as sensitive, intermediate, or resistant. Its findings assist physicians pick the appropriate drugs for their patients, both initially and long-term4.
This technique cannot discriminate between bactericidal and bacteriostatic effects because bacterial growth inhibition is not equivalent with bacterial death5. Agar-disk diffusion is used in clinical laboratories to evaluate which antibiotics will treat infections best. Kirby–Bauer, 6mm disk diffusion over thick Mueller–Hinton agar is a typical experiment in solid mediums6. An inhibitory zone forms when antimicrobial agent is spread over a bacterial-infested plate. Insufficient anti-biomicrobial agent concentration marks the zone's edge. CLSI recommends categorizing a strain's medication susceptibility depending on the size of the zone surrounding it2,7. This technique produces interpretative categories, per the description. Solid-medium tests are simple and inexpensive. Standard operating procedures improve the accuracy of manual agar-disk diffusion testing. Even a little change may affect the result. Other aspects that might affect results are commonly disregarded, such as bacterial growth rate and agent diffusion qualities. Considerations include resistant strains of bacteria in clinical settings and drug testing on these germs8, inoculum dose and storage9, disc alignment10, materials, and media11,12. When considering medium and components, agar thickness seems most relevant. Alternate 4 mm layers of conventional and cation-adjusted Mueller Hinton agar for diffusion testing 2,13. Davis and Stout11 demonstrate that the amount of agar poured, the shape of the agar, the bottom shape of the plates and many plates are in the stack and where they are in relation to each other affect the accuracy. Woolfrey et al.12 noted that Petri dish concavity affects accuracy. Hypothesis: Agar thickness and moisture alter antimicrobial drug diffusion, therefore affecting the zone of inhibition. For testing, use quantitative gradient diffusion. How well an antibiotic solution inhibits a microorganism or its products reveals its activity and, by extension, its concentration. Abrahams et al. (1941)14 and Tabaqchali et al. (1979)15 devised the "oxford cup" technique, which Heatley (1944) 1 reported for penicillin and Soad Zuhair et al. (1979) 15 for cefoxitin. Grove, Randall (1955) 16, and Zuhair 17 invented the "steel cup." "Eight queens puzzle’’ " provided tens of various designs. Zuhair et al. (1972). Most models are built on prior methodologies to allow for 64 disks of evaluated samples18–21. Our research involved two main parts. First, we used agar-disks diffusion on a transparent 32x32 cm larger plate for microbiological assay with lid to test a larger number of samples (up to 64 disks or holes). Second, we used a novel method to ensure that all of the samples were distributed evenly. This was accomplished by adapting the distribution principle used in the classic "eight queens puzzle" (5x5cm) to account for the larger sample size.
Figure 1. Photograph of the large plate and cover glass, simultaneously.
MATERIAL AND METHODS:
Plates will need to be prepared, and then poured. A large piece of plate glass measuring 13 inches by 13 inches (32.9 centimeters by 32.9 centimeters) is used for the assay plate. The distance between the plate glass and the flat surface varies according to the thickness of the medium being tested and is approximately 0.03, 0.07, 0.15, 0.23, and 0.31 inches (0.1, 0.2, 0.4, 0.6, and 0.8 centimeters). This allows for the creation of up to 64 uniform replications (Fig. 1). Epoxy glue is used to adhere the glass sides to the surface, with the sides projecting an additional 1 inch (2.5cm) above the surface. After that, a glass cover with a thickness of 0.25 inches may be firmly put over the top of the plate, and the seam can be sealed to prevent the plate from drying out. 11 inches is the diameter that may be found on the inside of the plate (27.9 by 27.9cm). After a thorough cleaning with soap and water, the glass is often prepared by swabbing it with an alcohol solution that is 70 percent ethyl and contains 4 percent concentrated HCI by volume. Additionally, the interior surface of the glass is swabbed with acetone and flamed before it is put to use. It is also possible to do autoclaving using flowing steam at a temperature of 100 degrees Celsius that is not under pressure, provided that the cooling of the glass is let to take place in a very progressive manner.
The assay agar is made by dispensing the medium from a large flask into six smaller flasks after mixing 76 grams of powder (Oxoid Muller Hinton agar) with 2,000 milliliters of distilled water in a large flask. The large flask is then placed in a water bath containing boiling water until the medium is clear (200ml each). As a result of the autoclaving process, there is about 125milliliters left when there were originally 145milliliters. Following the process of sterilizing, flasks that contain molten agar in the following volumes: 125, 250, 375, 500, and 625ml are put in a water bath heated to 56 degrees Celsius in order to keep the agar in a liquid form until it is emptied. Pouring (125, 250, 375, 500, 625ml) of seeded agar (see the section on Assay organisms for more information) into an assay plate that is placed on a particular pouring surface yields a layer that is about (1, 2, 4, 6, 8mm) deep and is uniform throughout its whole.After the seeded agar has had time to set, disks with a diameter of 6.0 millimeters are produced and deposited (Fig. 1). Because the thickness of the agar is 1, 2, 4, 6, and 8 millimeters, the concentrations of the various antibiotics are arranged in a symmetrical fashion. Even with varying antibiotic doses, the zone of inhibition provides adequate zone sizes, and they were chosen for the simplicity with which the Kirby Bauer Disc Diffusion technique may be carried out in accordance with CLSI Standard11,12. Between October 2020 and February 2022, a retrospective study was performed in a tertiary care hospital in the city of Karbala. Iraq's Al-Hussein Medical City. The diagnostic work is carried out by the microbiology laboratory inside the pharmacy department of Al Zahrawi University College. S. aureus and E.coli were identified based on the morphology of the Gram’s stain procedure, the features of the colonies, and the results of positive tests for catalase and coagulase of S. aureus and API 20 test of E. coli, it was established that S. aureus and E. coli bacteria were both present in the sample relatively12,22–25. Various clinical samples were isolated from inpatients, including sputum, urine, blood, cervical swab, and the tip of a catheter. The disc diffusion technique suggested by the Clinical and Laboratory Standard Institute was used to test for various antibiotics12,26,27. The antibiogram was carried out using a modified version of the Kirby-Bauer Disc Diffusion technique in accordance with CLSI Standards against the following antibiotics: erythromycin (ERY) (10g), ceftriaxone (CRO) (10g), ciprofloxacin (CIP) (10 g), gentamicin (CN) (10g), and streptomycin (S) (25g).
RESULT:
As was the case in earlier research, zoi's were connected with agar thickness, and then ETESTs were used to make a comparison between zoi's and agar thickness. This was done so that the effects of varying agar depth could be examined and analyzed. It was possible to examine the effect of agar thickness on zoi in a more precise manner because to the quantitative data acquired using ETESTs. In this study, a clinical strain was utilized to investigate the effects of the antibiotics erythromycin (ERY), ceftriaxone (CRO), ciprofloxacin (CIP), gentamicin (CN), and streptomycin (S). The following levels of Mueller–Hinton agar (Oxoid, UK) were used for the experiment: 1, 2, 4, 6, and 8 millimeters. In the experiment, the quantity of agar required was calculated using the weight of the agar-filled plates [the weight of the empty plates changed by less than 0.3 percent (12.56± 0.033 g)]. On the day when the inoculation was performed, plate depth measurements were collected. The findings are presented in (Table 1, 2). When the depth of the agar plate is increased, the size of the zone of inhibition will also grow, but it will be smaller. This holds true for both ciprofloxacin and erythromycin. Ceftriaxone and gentamicin had an impact that was somewhere in the middle, with streptomycin showing the least amount of activity. The influence of solidifying on zone size was investigated by doing AST testing on plates with thicknesses of 1, 2, 4, 6, and 8 millimeters after the plates had been unstacked and left closed on the workbench for seven days. The values of agar depth and zoi that are provided in Tables 1 and 2 are compared with those that are provided in Tables 3 and 4 correspondingly for both types of bacteria, and the results reveal that zoi has a positive correlation with plate weight. Through the use of linear regression analysis, a model of the link between agar depth and zoi may be created. Between the agar depth and the zone of inhibition, there is always an inclination in the opposite direction. Ciprofloxacin has a steeper slope than either erythromycin or ceftriaxone, indicating a difference in the absolute slope between the different antibiotics. As the agar depth increases, the antimicrobial agent's agar diffusion coefficient is likely to have an impact on the zoi. This is because the agar diffusion coefficient is measured in millimeters per second. Although we did not directly measure the diffusion coefficient, we did examine the molecular weight of the five antibiotics that were utilized in this investigation. Ciprofloxacin has a lower molecular weight (331.35g/mol) than streptomycin (581.57g/mol), which had the highest molecular weight.
Table 1: Comparing zone of inhibition for Staphylococcus aureus growth in different thickness of culture media. P values were reported by using Dunn's multiple comparisons test and significant differences were highlighted with yellow color.
Antibiotic disc |
P value for agar thickness groups comparisons |
|||||||||
1 vs. 2 |
1 vs. 4 |
1 vs. 6 |
1 vs. 8 |
2 vs. 4 |
2 vs. 6 |
2 vs. 8 |
4 vs. 6 |
4 vs. 8 |
6 vs. 8 |
|
Erythromycin |
> 0.9999 |
0.0592 |
< 0.0001 |
< 0.0001 |
0.7111 |
< 0.0001 |
< 0.0001 |
0.0321 |
0.0019 |
> 0.9999 |
Ceftriaxone |
> 0.9999 |
0.0156 |
< 0.0001 |
< 0.0001 |
0.1920 |
< 0.0001 |
< 0.0001 |
0.2595 |
0.0064 |
> 0.9999 |
Ciprofloxacin |
0.5697 |
> 0.9999 |
< 0.0001 |
< 0.0001 |
> 0.9999 |
0.0087 |
< 0.0001 |
0.0011 |
< 0.0001 |
> 0.9999 |
Gentamycin |
0.5123 |
0.0597 |
0.0001 |
< 0.0001 |
> 0.9999 |
0.1455 |
< 0.0001 |
> 0.9999 |
0.0003 |
0.1226 |
Streptomycin |
> 0.9999 |
0.3094 |
0.0002 |
< 0.0001 |
0.4931 |
0.0006 |
< 0.0001 |
0.3849 |
0.0003 |
0.3278 |
Table 2: Comparing zone of growth inhibition for Escherichia coli in various thickness of culture media. P values were generated by using Dunn's multiple comparisons test and significant differences were highlighted with yellow color.
Antibiotic disc |
P value for agar thickness groups comparisons |
|||||||||
1 vs. 2 |
1 vs. 4 |
1 vs. 6 |
1 vs. 8 |
2 vs. 4 |
2 vs. 6 |
2 vs. 8 |
4 vs. 6 |
4 vs. 8 |
6 vs. 8 |
|
Erythromycin |
> 0.9999 |
0.2442 |
0.0002 |
< 0.0001 |
> 0.9999 |
0.0175 |
< 0.0001 |
0.4784 |
0.0001 |
0.1765 |
Ceftriaxone |
> 0.9999 |
0.0377 |
< 0.0001 |
< 0.0001 |
> 0.9999 |
0.0035 |
< 0.0001 |
0.4557 |
0.0044 |
> 0.9999 |
Ciprofloxacin |
> 0.9999 |
> 0.9999 |
0.0003 |
< 0.0001 |
> 0.9999 |
< 0.0001 |
< 0.0001 |
0.0407 |
0.0001 |
> 0.9999 |
Gentamycin |
> 0.9999 |
0.1776 |
< 0.0001 |
< 0.0001 |
0.7036 |
< 0.0001 |
< 0.0001 |
0.0539 |
0.0026 |
> 0.9999 |
Streptomycin |
0.1165 |
0.0007 |
< 0.0001 |
< 0.0001 |
> 0.9999 |
0.0696 |
0.0556 |
> 0.9999 |
> 0.9999 |
> 0.9999 |
Table 3: Linear regression results summary for zone of growth inhibition for Staphylococcus aureus treated with several antibiotics in different agar thickness.
Antibiotic |
Slope |
Slope 95% confidence interval |
R2 |
Erythromycin |
-0.8815 ± 0.05003 |
-0.9812 to -0.7817 |
0.7992 |
Ceftriaxone |
-0.6858 ± 0.04423 |
-0.7740 to -0.5976 |
0.7550 |
Ciprofloxacin |
-0.8498 ± 0.06402 |
-0.9775 to -0.7222 |
0.6932 |
Gentamycin |
-0.6058 ± 0.05024 |
-0.7059 to -0.5056 |
0.6508 |
Streptomycin |
-0.6111 ± 0.04046 |
-0.6918 to -0.5304 |
0.7452 |
Table 4: Linear regression tabular summary for zone of inhibition for Escherichia coli growth as treated with several antibiotics and in different agar thickness.
Antibiotic |
Slope |
Slope 95% confidence interval |
R2 |
Erythromycin |
-0.6616 ± 0.05047 |
-0.7622 to -0.5609 |
0.6878 |
Ceftriaxone |
-0.5278 ± 0.04239 |
-0.6123 to -0.4433 |
0.6653 |
Ciprofloxacin |
-0.6172 ± 0.06212 |
-0.7411 to -0.4933 |
0.5586 |
Gentamycin |
-0.8352 ± 0.06104 |
-0.9569 to -0.7135 |
0.7059 |
Streptomycin |
-0.2591 ± 0.03545 |
-0.3298 to -0.1885 |
0.4066 |
Figure 1: Effect of agar thickness on zone of growth inhibition for Staphylococcus aureus produced by different antibiotic discs as seen in figure legends. N (groups number) = 5 with a replicate of 16 for each individual group, data are presented as mean ± standard deviation. P value for Kruskal-Wallis test is <0.0001.
Figure 2: Effect of agar thickness on zone of inhibition for Escherichia coli growth produced by different antibiotic discs as seen in figure legends. N (groups number) = 5 with a replicate of 16 for each individual group, data are presented as mean ± standard deviation. P value for Kruskal-Wallis test is <0.0001.
Figure 4: Line fitting by using linear regression to investigate the relation between agar thickness and zone of inhibition for Escherichia coli growth treated with several antibiotic discs as seen in figure legends. N (groups number) = 5 and each individual group is represented by 16 replicates as mean ± standard deviation. P value for slope ≠ zero is <0.0001.
DISCUSSION:
Its simplicity, low cost, ability to test large numbers of bacteria and antimicrobial medicines, and ease with which the results are interpreted make the agar-disks diffusion assay superior to other approaches. Moreover, several studies have shown that people with bacterial infections are eager to try an antibiotherapy tailored to their specific microbe's antibiogram28,29. Plant extracts, essential oils, and other therapeutics are routinely subjected to antimicrobial screening because of the previously described advantages of this approach30,31, especially its ease and cheap cost32–36. The agar-disks diffusion method has been widely used for 50 years to determine whether or not bacteria are resistant to a certain drug. The cup technique37 the paper disc method,38 and the standardized single disc method (SSM) are all examples of its many iterations39. Findings from zoi determinations utilizing these methods have been shown to be equivalent25,40. Thickness and consistency of the agar, cut-off sizes for zoi and breakpoints, temperature, etc. all affect the reliability of the agar-disks diffusion method. When these potentially confounding aspects are addressed or taken into account, the interpretation of the results from an agar diffusion test is based on theoretical models that combine a range of other critical assumptions, although necessary for the usage of these theoretical models, also create certain restrictions to the models' validity, therefore it's crucial to be aware of them.
According to theoretical antibiotic diffusion studies, the hydrodynamic viscous drag is the limiting element in the diffusion of antibiotics41. The "Eight Queens Puzzle" is the most popular model19. Plates of 32x32 cm have replaced the traditional 25x25 cm size in a semi-infinite area18,42 to accommodate larger test samples (up to 64 disks)21. The thickness of agar plates is related to the zoi factor in an equation43 and there are a number of equations that may be used to determine the appropriate thickness of agar plates44–46. This method facilitates reliable detection of antibiotic resistance, particularly to penicillins41,47. This model provides a good match for the diffusion data we've collected for erythromycin, ceftriaxone, ciprofloxacin, gentamicin, and streptomycin.
Free agar diffusion model inadequately describes association between antibiotic concentration and inhibition zone size. Subtilin and tetracycline exhibit a linear relationship between zoi size and logarithm of concentration48. Other models have been created because of problems with the free diffusion model. These models assume a quadratic relationship between zone size and concentration and use novel methods such as increasing the agar surface area by increasing the size of the plate21,49–51. The first method is a straightforward method for determining the size of a well zone across a broad range of concentrations. The latter method needs an unending succession of special functions, which is impractical for routine microbiological work. Antibiotics may be lost owing to interactions with solid medium components, aggregation, or other processes. In our method, which is a novel way of distributing disks and its relationship with agar thickness, there are many potential solutions, including the development of antibiotic disks and a change in agar thickness. Two possible solutions: Logarithmic correlation between zone width and concentration is clearly described by free or dissipative models in most real situations, and the complex mathematical approach adds little. Change the thickness. In most cases, a mathematical approach adds little benefit. In addition, "eight queens puzzle" best reflected the connection of zone size on logarithm of concentration for all antibiotics evaluated for agar surface distribution. The free eight-queens puzzle model provides a very accurate description of antibiotic-induced zoi sizes, as shown by our investigations utilizing agar-diffusion in plate and their link with agar thickness. Linear regression was needed to determine the connection between agar thickness and zone of growth inhibition for Staphylococcus aureus and Escherichia coli treated with antibiotic discs. The first group (erythromycin) had similar outcomes for both bacteria (Fig. 3, 4), while the second group (gentamicin and ceftriaxone) had similar findings. Third group (ciprofloxacin) best suited linear model. With streptomycin, both bacteria showed the same residual deviation. The concentration dependence within the streptomycin group was even bigger than linear, suggesting that rather than a single concentration operating as a cut-off point, there is a range of values at which the test organism shows limited sensitivity to these antibiotics. Consideration of the mechanism through which antibiotics work is also relevant to this alternative hypothesis. Bacteriostatic antibiotics, like Erythromycin, halt the growth of bacteria rather than eradicating them instantly. The bacteria in the first group use an active transport mechanism to take up erythromycin.
This effect is achieved by impeding the process of protein synthesis. The 23S ribosomal RNA molecule, which is present in the 50S subunit of the ribosome in bacteria, binds to Erythromycin, preventing the peptide chain from leaving the ribosome52–54. Gentamicin, which belongs to the second category, undergoes oxygen-dependent active transport when it crosses the membrane. Once in the cytoplasm, gentamicin and other aminoglycosides bind to the 16s rRNA at the 30s ribosomal subunit. This disrupts the translation of mRNA, which ultimately results in the creation of proteins that are either truncated or nonfunctional55, In addition, ceftriaxone is effective because it blocks the production of mucopeptides in the bacterial cell wall. Ceftriaxone's beta-lactam component forms strong bonds with the carboxypeptidases, endopeptidases, and transpeptidases that are found in the cytoplasmic membrane of bacteria. These enzymes have a hand in the production of cell walls as well as the division of cells. The binding of ceftriaxone to these enzymes causes the enzyme to lose function, which in turn leads to the production of faulty cell walls by the bacteria, which ultimately results in the death of the cells56. Ciprofloxacin, a fluoroquinolone antibiotic, is one of the three fluoroquinolones. It impedes DNA replication by interfering with the activity of bacterial DNA topoisomerase and DNA-gyrase, both of which are essential for DNA replication57. Streptomycin inhibits ribosomal protein/peptide synthesis. It binds to 16S rRNA on the 30S component of the bacterial ribosome, limiting its activity and stopping protein synthesis by blocking peptide bond formation58–60. Due to multidrug pumps and other considerations, the antibiotic concentration at the target may not match the concentration in a medium as represented by current diffusion models. Antibiotic dispersion in the medium has a minor impact, according to this text. Variables may affect agar diffusion experiment accuracy. Multiple discs are put on the same Petri plate for tests to eliminate growth time or temperature discrepancies. Agar homogeneity and thickness may alter zone size and shape, hence preparation is key11. Eight queens puzzle model avoids antibiotic interactions, regardless of dose, hence agar distribution does not need to be precise.
CONCLUSION:
In order to assess the zone of inhibition in antimicrobial susceptibility testing, disk diffusion is frequently used on a solid medium. Previous research has shown that variations in agar depth may alter the reliability of this test11,12, the recommended agar depth according to CLSI standards is 4 mm. Assay users have no idea how precise they need to be when pouring plates until they learn how variations in this depth impact findings. To measure the correlation between agar depth and zoi, we employed a novel modified approach for disk distribution and used data acquired from ETESTs. The smaller the agent under examination, the stronger the negative connection we observe between these two factors.
CONFLICT OF INTEREST:
The authors have no conflicts of interest regarding this investigation.
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Received on 20.06.2022 Modified on 28.07.2022
Accepted on 07.09.2022 © RJPT All right reserved
Research J. Pharm. and Tech 2023; 16(1):294-300.
DOI: 10.52711/0974-360X.2023.00053