Genotyping of Angiotensin Converting Enzyme (ACE 1) Gene in study subject with hypertension and Chronic Kidney Disease
Suganya V1, Jannathul Firdous2*, Karpagam T3*, Varalakshmi B3, Shanmugapriya A3,
Gomathi S3, Sugunabai J4
1Department of Biochemistry, Mohamed Sathak College of Arts and Science, Chennai, India.
2Pre-Clincal Department, Faculty of Medicine, University Kuala Lumpur Royal College of Medicine Perak, No.3, Jalan Greentown, 30450 Ipoh, Perak, Malaysia.
3Department of Biochemistry, Shrimati Indira Gandhi College, Tiruchirappalli, India.
4Department of Biochemistry, Seethalakshmi Ramaswamy College, Tiruchirappalli, India.
*Corresponding Author E-mail: Jannathul.firdous@unikl.edu.my
ABSTRACT:
Hypertension and Chronic kidney disease are two most prominent public health problems and show similar clinical complications like high blood pressure and poor renal system. These diseases are due to over activation of sympathetic nervous system. Genetically, the angiotensin-converting enzyme (ACE) gene is involved in hypertension and chronic kidney diseases where the D polymorphism is related to chronic kidney disease and hypertension. The objective of study is to correlate the absolute relationship between hypertension and renal complications in the polymorphism of ACE 1 gene. Results of statistical analysis conclude that none of the genotype distributions followed the Hardy-Weinberg equilibrium and the differences in genotypes or alleles were not statistically significant. The overall frequency of II genotype was 0.226, DD was 0.499 and ID was 0.276 respectively. Similarly, the frequency of I allele in the study population was 0.475 and D allele was 0.525 respectively. Although the results showed that ID genotype for ACE1 gene are found in hypertension and chronic kidney disease, large studies should be performed to verify the analysis.
KEYWORDS: Angiotensin converting enzyme, hypertension, chronic kidney disease and nested PCR.
INTRODUCTION:
Quantity of DNA (ng/µl) = OD at 260 nm X 50 X Dilution factor
1000
Designing of primers:
Primers specific for ACE 1 genes were sequenced and designed by Tabie et al. (2013)10 as shown in Table 1.
Table 1: Primers for Nested PCR amplification of ACE 1 gene.
|
Oligo Name |
Length |
Tm(°C) |
Gc% |
Sequence |
|
FP1 |
22 |
56.7 |
54.6 |
5’-CTGGAGACCACCCATCCTTTCT-3’ |
|
RP1 |
25 |
57.7 |
48 |
5’-GATGTGGCCATCACATTCGTCAGAT-3’ |
|
FP2 |
24 |
65.9 |
70.8 |
5’-TCGGACCACAGCGCCCGCCACTAC-3’ |
|
RP2 |
23 |
62.4 |
65.2 |
5’-CGCCAGCCCTCCCATGCCCATAA-3’ |
*FP1, RP1 – Forward and reverse primers for first PCR amplification; FP2, RP2 – Forward and reverse primers for second PCR amplification.
PCR amplification of ACE1:
About 5 µl aliquot of PCR amplified product was loaded on 2% agarose in 1X TAE buffer and at 50V for 45 minutes. 100 bp DNA ladder was used as the marker and the PCR products were visualized in a UV transilluminator. PCR amplification of deletions (D) and insertions (I) of ACE1 were evaluated in a 20μl reaction mixture containing 200ng of the template DNA, 7.5 pmol/l of each primer, 0.2mM of each dNTP, 1.5mM MgCl2, 2.5 µL10X buffer and 1U Taq DNA polymerase. The PCR amplification included 30 cycles of denaturation at 94°C (one minute), annealing at 58°C (one minute) and extension at 72°C (two minutes) as shown in Table 2.
Table 2: PCR Cycling Conditions.
|
Step |
Temperature |
Time |
|
Initial denaturation |
94° C |
1 minute |
|
Denaturation (for cycles) |
94° C |
30 seconds |
|
Annealing (for cycles) |
58° C |
30 seconds |
|
Extension (for cycles) |
72° C |
1 minute |
|
Final extension |
72° C |
8 minutes |
|
Number of cycles -30 |
||
Statistical analysis:
All statistical analysis was performed with SPSS 14.0 for Microsoft Windows. Group findings were compared with chi squared test (P ≤ 0.05). The association between ACE gene polymorphism with hypertension and CKD, Odds ratio were analyzed with (P≥ 0.05).
RESULTS AND DISCUSSION:
DNA isolated from blood samples of the study group was confirmed by agarose gel electrophoresis which was loaded in lane 3, 4, 5 and 6 and the size was found to be 23 kb as compared with the Lamba DNA/Hind III digest used as marker loaded in lane 1 as shown in Figure 1.
Figure 1: Agarose gel electrophoresis of human blood sample shown as a representative.
With the electrophoretic results, DNA purity and quantity were assessed by absorbance. The quantity of DNA for patients who belonged to group 1 was 5ng/μl, group 2 was 7.5ng/μl, group 3 was 15ng/ μl and group 4 was 12.5ng/μl as shown in Table 3.
Table 3: Quantification of DNA for four groups
|
Group |
OD at 260nm |
Quantity of DNA (ng/μl) |
|
1 |
0.01 |
5 |
|
2 |
0.02 |
7.5 |
|
3 |
0.03 |
15 |
|
4 |
0.05 |
12.5 |
Nested PCR with first reaction product were done as shown in Figure 2 and 3 where PCR lane 1 was loaded with 100bp DNA ladder (marker) and lane 3 to 6 were loaded with samples from group 1 to group 4. Band in DNA ladder was obtained with I allele at 490 bp and D allele at 190 bp region. A band of 490 bp represented II genotype, 190 bp represented DD genotype and two bands of 490 bp and 190 bp demonstrated ID genotype (Figure 2). PCR result with sample groups showed bands with homozygous DD with II genotypes was absent, whereas two bands of 190 bp and 335 bp were obtained for ID genotype (Figure 3).
Figure 2: Nested PCR with first reaction product by Agarose gel electrophoresis.
Figure 3: Nested PCR with sample second reaction product by Agarose gel electrophoresis.
In the present study, there was ACE1 polymorphism which was checked in study groups using a nested PCR reaction. In the first PCR, a band for I allele at 490 bp and for D allele at 190 bp was obtained. In lane 3 and 5 there were 2 bands one at 190 bp and another at 490bp which represented ID genotype, in lane 4 there was only one band at 190 bp which represented DD genotype and in lane 6 also there was only one band at 490 bp which represented II genotype. In the second PCR, no bands resulted for homozygous DD and II genotypes whereas two bands of 190 bp and 335 bp illustrated ID genotype. When compared genotype distribution of ACE1 gene, no significant differences were found between four groups as shown in Figure 4.
Figure 4: Genotype and allele distribution of ACE1 gene polymorphisms in four groups.
According to the study done by Tabei et al. (2013), their findings compared the pertinence of AGT-TT genotype in patients with hypertension and simple renal cysts10. The results confirmed the additive role of AGT gene in renin-angiotensin system during the mechanism of hypertension and simple renal cysts formation. There were prevalent in different genetic polymorphisms of ACE1 among different groups but none of the genotype distributions followed the Hardy-Weinberg equilibrium. Similarly in the present study, the statistical analysis revealed that none of the genotype distributions followed the Hardy-Weinberg equilibrium. The overall frequency of II genotype, DD and ID were0.226, 0.499 and 0.276 respectively. Similarly, the frequency of I allele in the study population was 0.475 and D allele was 0.525 respectively. The differences in genotypes or alleles were not statistically significant.
The results of previous research were in accordance with the results of the present findings. The conventional PCR method in genotyping ACE gene polymorphism was variable, required careful control, and often needed repeated testing, especially to verify the ID heterozygote. The confirmatory PCR method had higher accuracy but needed preferential amplification of the multiplexed PCR. The confirmatory PCR could be the method of choice in screening ACE gene polymorphisms11. In the present findings the use of conventional and confirmatory PCR to rule out the genetic polymorphism was in agreement with the previous study.
In order to quantify strongly the association between ACE gene polymorphism with hypertension and CKD, Odds ratio were analyzed with (P≥ 0.05). Results of Odds Ratio (OR) analysis showed the ID genotype in significant relation with hypertension and CKD. As a result of OR analysis, OR of II genotype was equal to 1, which confirmed that the polymorphism has no influence on hypertension or CKD. The OR of ID genotype found to be greater than 1 and therefore, the ID genotype is associated with the development and progression of hypertension and CKD. OR of DD genotype was found lesser than 1 and consequently, the gene is less significant in determining the occurrence or progression of the CKD or hypertension as shown in Table 4.
Table 4: Odd Ratio (OR) analysis of ACE1 gene polymorphism.
|
Independent Variant
|
Genotype |
OR |
P value |
||
|
Cases |
Control |
Result |
|||
|
ACE-1 |
II |
3 |
1 |
1 |
0.517 |
|
ID |
9 |
2 |
1.5 |
0.435 |
|
|
DD |
3 |
2 |
0.5 |
0.371 |
|
Statistical method with (P ≥ 0.05) showed that there were no significant difference between groups and genotype versus genotype distribution related to ACE gene. Although the results comprise the evidence of an additive role for the ID genotype of the ACE1 gene in the process of hypertension and chronic kidney disease formation in the study population, large case-control studies should be performed to verify the research findings. In order to quantify strongly the association between ACE gene polymorphism with hypertension and CKD, Odds ratio were analyzed. Results of Odds Ratio (OR) analysis showed the ID genotype in significant relation with hypertension and CKD. As a result of OR analysis, OR of II genotype was equal to 1, which confirmed that the polymorphism has no influence on hypertension or CKD. The OR of ID genotype found to be greater than 1 and therefore, the ID genotype is associated with the development and progression of hypertension and CKD. OR of DD genotype was found lesser than 1 and consequently, the gene is less significant in determining the occurrence or progression of the CKD or hypertension. Even statistical method with (P ≥ 0.05) showed that there were no significant difference between groups and genotype versus genotype distribution related to ACE gene.
CONCLUSION:
ACE1 variant patients with chronic kidney disease and hypertension have a significant role in the pathophysiology. The results showed the differences in other genotypes or alleles were not statistically significant with exception of ID genotype. Although the results comprise the evidence of an additive role for the ID genotype of the ACE1 gene in the process of hypertension and chronic kidney disease formation in the study population, large case-control studies should be performed to verify the research findings.
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Received on 11.05.2017 Modified on 05.06.2017
Accepted on 17.06.2017 © RJPT All right reserved
Research J. Pharm. and Tech. 2017; 10(8): 2607-2610.
DOI: 10.5958/0974-360X.2017.00462.0